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GOTHiC - Binomial test for Hi-C data analysis
This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.
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immunooncologysequencingpreprocessingepigeneticshic
4.92 score 1 dependents 14 scripts 732 downloadsHiCDataLymphoblast - Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009
The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.
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experimentdatahomo_sapiens_datadatapkg
3.30 score